Multiple Genetic Loci for Bone Mineral Density and Fractures
Unnur Styrkarsdottir, Ph.D., Bjarni V. Halldorsson, Ph.D., Solveig Gretarsdottir, Ph.D., Daniel F. Gudbjartsson, Ph.D., G. Bragi Walters, B.Sc., Thorvaldur Ingvarsson, M.D., Ph.D., Thorbjorg Jonsdottir, B.Sc., Jona Saemundsdottir, B.Sc., Jacqueline R. Center, M.B., B.S., Ph.D., Tuan V. Nguyen, Ph.D., Yu Bagger, M.D., Jeffrey R. Gulcher, M.D., Ph.D., John A. Eisman, M.B., B.S., Ph.D., Claus Christiansen, M.D., Gunnar Sigurdsson, M.D., Ph.D., Augustine Kong, Ph.D., Unnur Thorsteinsdottir, Ph.D., and Kari Stefansson, M.D., Ph.D.
Background Bone mineral density influences the risk of osteoporosislater in life and is useful in the evaluation of the risk offracture. We aimed to identify sequence variants associatedwith bone mineral density and fracture.
Methods We performed a quantitative trait analysis of data from5861 Icelandic subjects (the discovery set), testing for anassociation between 301,019 single-nucleotide polymorphisms(SNPs) and bone mineral density of the hip and lumbar spine.We then tested for an association between 74 SNPs (most of whichwere implicated in the discovery set) at 32 loci in replicationsets of Icelandic, Danish, and Australian subjects (4165, 2269,and 1491 subjects, respectively).
Results Sequence variants in five genomic regions were significantlyassociated with bone mineral density in the discovery set andwere confirmed in the replication sets (combined P values, 1.2x10–7to 2.0x10–21). Three regions are close to or within genespreviously shown to be important to the biologic characteristicsof bone: the receptor activator of nuclear factor-B ligand gene(RANKL) (chromosomal location, 13q14), the osteoprotegerin gene(OPG) (8q24), and the estrogen receptor 1 gene (ESR1) (6q25).The two other regions are close to the zinc finger and BTB domaincontaining 40 gene (ZBTB40) (1p36) and the major histocompatibilitycomplex region (6p21). The 1p36, 8q24, and 6p21 loci were alsoassociated with osteoporotic fractures, as were loci at 18q21,close to the receptor activator of the nuclear factor-B gene(RANK), and loci at 2p16 and 11p11.
Conclusions We have discovered common sequence variants thatare consistently associated with bone mineral density and withlow-trauma fractures in three populations of European descent.Although these variants alone are not clinically useful in theprediction of risk to the individual person, they provide insightinto the biochemical pathways underlying osteoporosis.
Source Information
From deCODE Genetics (U.S., B.V.H., S.G., D.F.G., G.B.W., T.J., J.S., J.R.G., A.K., U.T., K.S.), Reykjavik University (B.V.H.), and University Hospital (G.S.) — all in Reykjavik, Iceland; Fjordungssjukrahusid Akureyri University Hospital, Akureyri, Iceland (T.I.); Garvan Institute of Medical Research, Sydney (J.R.C., T.V.N., J.A.E.); and Center for Clinical and Basic Research, Ballerup (Y.B.), and Nordic Bioscience, Herlev (C.C.) — both in Denmark. This article (10.1056/NEJMoa0801197) was published at www.nejm.org on April 29, 2008.
Address reprint requests to Dr. Stefansson at deCODE Genetics, Sturlugata 8, IS-101, Reykjavik, Iceland, or atkari.stefansson{at}decode.is.
Grundberg, E., Kwan, T., Ge, B., Lam, K. C.L., Koka, V., Kindmark, A., Mallmin, H., Dias, J., Verlaan, D. J., Ouimet, M., Sinnett, D., Rivadeneira, F., Estrada, K., Hofman, A., van Meurs, J. M., Uitterlinden, A., Beaulieu, P., Graziani, A., Harmsen, E., Ljunggren, O., Ohlsson, C., Mellstrom, D., Karlsson, M. K., Nilsson, O., Pastinen, T.
(2009). Population genomics in a disease targeted primary cell model. Genome Res
19: 1942-1952
[Abstract][Full Text]
Richards, J. B., Kavvoura, F. K., Rivadeneira, F., Styrkarsdottir, U., Estrada, K., Halldorsson, B. V., Hsu, Y.-H., Zillikens, M. C., Wilson, S. G., Mullin, B. H., Amin, N., Aulchenko, Y. S., Cupples, L. A., Deloukas, P., Demissie, S., Hofman, A., Kong, A., Karasik, D., van Meurs, J. B., Oostra, B. A., Pols, H. A.P., Sigurdsson, G., Thorsteinsdottir, U., Soranzo, N., Williams, F. M.K., Zhou, Y., Ralston, S. H., Thorleifsson, G., van Duijn, C. M., Kiel, D. P., Stefansson, K., Uitterlinden, A. G., Ioannidis, J. P.A., Spector, T. D., for the GEFOS (Genetic Factors for Osteoporosis) C,
(2009). Collaborative Meta-analysis: Associations of 150 Candidate Genes With Osteoporosis and Osteoporotic Fracture. ANN INTERN MED
151: 528-537
[Abstract][Full Text]
Pitocco, D., Zelano, G., Gioffre, G., Di Stasio, E., Zaccardi, F., Martini, F., Musella, T., Scavone, G., Galli, M., Caputo, S., Mancini, L., Ghirlanda, G.
(2009). Association Between Osteoprotegerin G1181C and T245G Polymorphisms and Diabetic Charcot Neuroarthropathy: A case-control study. Diabetes Care
32: 1694-1697
[Abstract][Full Text]
Jin, H., van't Hof, R. J., Albagha, O. M.E., Ralston, S. H.
(2009). Promoter and intron 1 polymorphisms of COL1A1 interact to regulate transcription and susceptibility to osteoporosis. Hum Mol Genet
18: 2729-2738
[Abstract][Full Text]
DENNISON, E. M., SYDDALL, H. E., JAMESON, K. A., SAYER, A. A., GAUNT, T. R., RODRIGUEZ, S., DAY, I. N.M., COOPER, C., LIPS, M. A., the Hertfordshire Cohort Study Group,
(2009). A Study of Relationships Between Single Nucleotide Polymorphisms from the Growth Hormone-Insulin-like Growth Factor Axis and Bone Mass: the Hertfordshire Cohort Study. The Journal of Rheumatology
36: 1520-1526
[Abstract][Full Text]
Andrews, N. A.
(2009). SNPs in the Clinic for Fracture Risk Prediction: A Foreseeable Reality or a Distant Dream?. IBMS BoneKEy
6: 163-168
[Full Text]
Hirschhorn, J. N.
(2009). Genomewide Association Studies -- Illuminating Biologic Pathways. NEJM
360: 1699-1701
[Full Text]
Timpson, N. J., Tobias, J. H., Richards, J. B., Soranzo, N., Duncan, E. L., Sims, A.-M., Whittaker, P., Kumanduri, V., Zhai, G., Glaser, B., Eisman, J., Jones, G., Nicholson, G., Prince, R., Seeman, E., Spector, T. D., Brown, M. A., Peltonen, L., Smith, G. D., Deloukas, P., Evans, D. M.
(2009). Common variants in the region around Osterix are associated with bone mineral density and growth in childhood. Hum Mol Genet
18: 1510-1517
[Abstract][Full Text]
Mencej-Bedrac, S., Prezelj, J., Kocjan, T., Teskac, K., Ostanek, B., Smelcer, M., Marc, J.
(2009). The combinations of polymorphisms in vitamin D receptor, osteoprotegerin and tumour necrosis factor superfamily member 11 genes are associated with bone mineral density. J Mol Endocrinol
42: 239-247
[Abstract][Full Text]
Cheung, C.-L., Chan, B. Y.Y., Chan, V., Ikegawa, S., Kou, I., Ngai, H., Smith, D., Luk, K. D.K., Huang, Q.-Y., Mori, S., Sham, P.-C., Kung, A. W.C.
(2009). Pre-B-cell leukemia homeobox 1 (PBX1) shows functional and possible genetic association with bone mineral density variation. Hum Mol Genet
18: 679-687
[Abstract][Full Text]
Hirschhorn, J. N., Gennari, L.
(2008). Bona Fide Genetic Associations with Bone Mineral Density. NEJM
358: 2403-2405
[Full Text]
Xiong, D., Ferrari, S. L., Deng, H.-W.
(2008). Genomewide Association Studies in Osteoporosis: Have We Reached the Bottom of the Ocean or the Tip of the Iceberg?. IBMS BoneKEy
5: 182-185
[Full Text]